Supplementary data to the paper

Single Nucleotide Polymorphisms in Wild Isolates of Caenorhabditis elegans. Genome Research, 10: 1690-1696, Koch et al.

Supplementary data can be downloaded from this site as a MS Excel file or viewed as seperate .pdf files. The files contain map positions of the SNPs updated until march 2001, wild type and polymorphic sequences of the SNPs, restriction digest sizes, distribution of SNPs between natural isolates and oligos used for the amplification/sequencing etc. This data will also be included in the Sanger Centre SNP database.

Download the whole MS Excel worksheet: SNPs.xls

View worksheet with SNPs from all chromosomes: SNP1.pdf

View worksheet with snipSNPs from all chromosomes: SNP2.pdf

View worksheet with SNPs on ChrIII surrounding clone H04J21: SNP3.pdf

View worksheet with SNPs on ChrI surrounding clone W08E3: SNP4.pdf

For more information, please contact Romke Koch rkoch@REMOVEniob.knaw.nl or Ronald Plasterk plasterk@REMOVEniob.knaw.nl

More info on using SNPs for mapping (with snipSNPs and the Hawaiian strain CB4856) can be found on our website here.

Hubrecht Laboratory
Uppsalalaan 8, 3584 CT Utrecht, The Netherlands
Telephone: +31 30 2121800
Telefax: +31 30 2516554

Reference: Koch, R., van Luenen, H. G. A. M., van der Horst, M., Thijssen, K. L. and Plasterk, R. H. A. (2000) Single Nucleotide Polymorp hisms in Wild Isolates of Caenorhabditis elegans. Genome Research, 10: 1690-1696

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